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» Maximum entropy methods for biological sequence modeling
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STOC
2000
ACM
156views Algorithms» more  STOC 2000»
14 years 1 months ago
Near optimal multiple alignment within a band in polynomial time
Multiple sequence alignment is a fundamental problem in computational biology. Because of its notorious difficulties, aligning sequences within a constant band (c-diagonal) is a ...
Ming Li, Bin Ma, Lusheng Wang
KDD
2006
ACM
134views Data Mining» more  KDD 2006»
14 years 9 months ago
Learning to rank networked entities
Several algorithms have been proposed to learn to rank entities modeled as feature vectors, based on relevance feedback. However, these algorithms do not model network connections...
Alekh Agarwal, Soumen Chakrabarti, Sunny Aggarwal
CVPR
2007
IEEE
14 years 11 months ago
Kernel-based Tracking from a Probabilistic Viewpoint
In this paper, we present a probabilistic formulation of kernel-based tracking methods based upon maximum likelihood estimation. To this end, we view the coordinates for the pixel...
Quang Anh Nguyen, Antonio Robles-Kelly, Chunhua Sh...
RECOMB
2010
Springer
14 years 1 months ago
MoGUL: Detecting Common Insertions and Deletions in a Population
Abstract. While the discovery of structural variants in the human population is ongoing, most methods for this task assume that the genome is sequenced to high coverage (e.g. 40x),...
Seunghak Lee, Eric Xing, Michael Brudno
BMCBI
2010
135views more  BMCBI 2010»
13 years 9 months ago
A classification approach for genotyping viral sequences based on multidimensional scaling and linear discriminant analysis
Background: Accurate classification into genotypes is critical in understanding evolution of divergent viruses. Here we report a new approach, MuLDAS, which classifies a query seq...
Ji Woong Kim, Yongju Ahn, Kichan Lee, Sung-Hee Par...