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» Maximum entropy methods for biological sequence modeling
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BMCBI
2010
138views more  BMCBI 2010»
13 years 9 months ago
Amino acid classification based spectrum kernel fusion for protein subnuclear localization
Background: Prediction of protein localization in subnuclear organelles is more challenging than general protein subcelluar localization. There are only three computational models...
Suyu Mei, Wang Fei
ACL
2009
13 years 7 months ago
Do Automatic Annotation Techniques Have Any Impact on Supervised Complex Question Answering?
In this paper, we analyze the impact of different automatic annotation methods on the performance of supervised approaches to the complex question answering problem (defined in th...
Yllias Chali, Sadid A. Hasan, Shafiq R. Joty
ISMB
2004
13 years 10 months ago
Predicting gene regulation by sigma factors in Bacillus subtilis from genome-wide data
Motivation: Sigma factors regulate the expression of genes in Bacillus subtilis at the transcriptional level. First we assess the ability of currently available gene regulatory ne...
Michiel J. L. de Hoon, Yuko Makita, Seiya Imoto, K...
RECOMB
2004
Springer
14 years 9 months ago
Learning Regulatory Network Models that Represent Regulator States and Roles
Abstract. We present an approach to inferring probabilistic models of generegulatory networks that is intended to provide a more mechanistic representation of transcriptional regul...
Keith Noto, Mark Craven
BMCBI
2010
176views more  BMCBI 2010»
13 years 9 months ago
Bayesian statistical modelling of human protein interaction network incorporating protein disorder information
Background: We present a statistical method of analysis of biological networks based on the exponential random graph model, namely p2-model, as opposed to previous descriptive app...
Svetlana Bulashevska, Alla Bulashevska, Roland Eil...