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» Maximum entropy methods for biological sequence modeling
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BMCBI
2008
94views more  BMCBI 2008»
13 years 9 months ago
Identification of Proteins Secreted by Malaria Parasite into Erythrocyte using SVM and PSSM profiles
Background: Malaria parasite secretes various proteins in infected RBC for its growth and survival. Thus identification of these secretory proteins is important for developing vac...
Ruchi Verma, Ajit Tiwari, Sukhwinder Kaur, Grish C...
BMCBI
2006
202views more  BMCBI 2006»
13 years 9 months ago
DWARF - a data warehouse system for analyzing protein families
Background: The emerging field of integrative bioinformatics provides the tools to organize and systematically analyze vast amounts of highly diverse biological data and thus allo...
Markus Fischer, Quan K. Thai, Melanie Grieb, J&uum...
DIS
2010
Springer
13 years 7 months ago
Adapted Transfer of Distance Measures for Quantitative Structure-Activity Relationships
Quantitative structure-activity relationships (QSARs) are regression models relating chemical structure to biological activity. Such models allow to make predictions for toxicologi...
Ulrich Rückert, Tobias Girschick, Fabian Buch...
COLING
2010
13 years 4 months ago
Discriminative Induction of Sub-Tree Alignment using Limited Labeled Data
We employ Maximum Entropy model to conduct sub-tree alignment between bilingual phrasal structure trees. Various lexical and structural knowledge is explored to measure the syntac...
Jun Sun, Min Zhang, Chew Lim Tan
CIBCB
2005
IEEE
13 years 11 months ago
A Transcriptional Approach to Gene Clustering
— We present an integrative method for clustering coregulated genes and elucidating their underlying regulatory mechanisms. We use multi-state partition functions and thermodynam...
Ilias Tagkopoulos