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RECOMB
2009
Springer
14 years 8 months ago
Storage and Retrieval of Individual Genomes
A repetitive sequence collection is one where portions of a base sequence of length n are repeated many times with small variations, forming a collection of total length N. Example...
Gonzalo Navarro, Jouni Sirén, Niko Väl...
COCOON
1998
Springer
14 years 1 days ago
The Colored Sector Search Tree: A Dynamic Data Structure for Efficient High Dimensional Nearest-Foreign-Neighbor Queries
Abstract. In this paper we present the new data structure Colored Sector Search Tree (CSST ) for solving the Nearest-Foreign-Neighbor Query Problem (NFNQP ): Given a set S of n col...
Thomas Graf, V. Kamakoti, N. S. Janaki Latha, C. P...
CPM
2004
Springer
144views Combinatorics» more  CPM 2004»
14 years 1 months ago
A Simple Optimal Representation for Balanced Parentheses
We consider succinct, or highly space-efficient, representations of a (static) string consisting of n pairs of balanced parentheses, that support natural operations such as findi...
Richard F. Geary, Naila Rahman, Rajeev Raman, Venk...
ICDE
2004
IEEE
105views Database» more  ICDE 2004»
14 years 9 months ago
SPINE: Putting Backbone into String Indexing
The indexing technique commonly used for long strings, such as genomes, is the suffix tree, which is based on a vertical (intra-path) compaction of the underlying trie structure. ...
Naresh Neelapala, Romil Mittal, Jayant R. Haritsa
SIGGRAPH
1999
ACM
14 years 5 days ago
LDI Tree: A Hierarchical Representation for Image-Based Rendering
Using multiple reference images in 3D image warping has been a challenging problem. Recently, the Layered Depth Image (LDI) was proposed by Shade et al. to merge multiple referenc...
Chun-Fa Chang, Gary Bishop, Anselmo Lastra