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» Methods in biomedical ontology
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NLDB
2005
Springer
14 years 1 months ago
Natural Language Processing: Mature Enough for Requirements Documents Analysis?
Requirements engineering is the Achilles’ heel of the whole software development process, because requirements documents are often inconsistent and incomplete. Misunderstandings ...
Leonid Kof
BMCBI
2006
129views more  BMCBI 2006»
13 years 7 months ago
A literature-based similarity metric for biological processes
Background: Recent analyses in systems biology pursue the discovery of functional modules within the cell. Recognition of such modules requires the integrative analysis of genome-...
Monica Chagoyen, Pedro Carmona-Saez, Concha Gil, J...
BMCBI
2005
124views more  BMCBI 2005»
13 years 7 months ago
ErmineJ: Tool for functional analysis of gene expression data sets
Background: It is common for the results of a microarray study to be analyzed in the context of biologically-motivated groups of genes such as pathways or Gene Ontology categories...
Homin K. Lee, William Braynen, Kiran Keshav, Paul ...
CIKM
2009
Springer
14 years 2 months ago
Enabling multi-level relevance feedback on pubmed by integrating rank learning into DBMS
Background: Finding relevant articles from PubMed is challenging because it is hard to express the user’s specific intention in the given query interface, and a keyword query ty...
Hwanjo Yu, Taehoon Kim, Jinoh Oh, Ilhwan Ko, Sungc...
BIBM
2008
IEEE
141views Bioinformatics» more  BIBM 2008»
14 years 2 months ago
Protein-Protein Interaction Network Alignment by Quantitative Simulation
We adapt a network simulation algorithm called quantitative simulation (QSim) for use in the alignment of biological networks. Unlike most network alignment methods, QSim finds l...
Perry Evans, Ted Sandler, Lyle H. Ungar