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ICMLA
2010
13 years 5 months ago
Smoothing Gene Expression Using Biological Networks
Gene expression (microarray) data have been used widely in bioinformatics. The expression data of a large number of genes from small numbers of subjects are used to identify inform...
Yue Fan, Mark A. Kon, Shinuk Kim, Charles DeLisi
SLIP
2003
ACM
14 years 22 days ago
Perimeter-degree: a priori metric for directly measuring and homogenizing interconnection complexity in multilevel placement
In this paper, we describe an accurate metric (perimeter-degree) for measuring interconnection complexity and effective use of it for controlling congestion in a multilevel framew...
Navaratnasothie Selvakkumaran, Phiroze N. Parakh, ...
BMCBI
2007
112views more  BMCBI 2007»
13 years 7 months ago
Selecting dissimilar genes for multi-class classification, an application in cancer subtyping
Background: Gene expression microarray is a powerful technology for genetic profiling diseases and their associated treatments. Such a process involves a key step of biomarker ide...
Zhipeng Cai, Randy Goebel, Mohammad R. Salavatipou...
BIBE
2001
IEEE
188views Bioinformatics» more  BIBE 2001»
13 years 11 months ago
Interrelated Two-way Clustering: An Unsupervised Approach for Gene Expression Data Analysis
DNA arrays can be used to measure the expression levels of thousands of genes simultaneously. Currently most research focuses on the interpretation of the meaning of the data. How...
Chun Tang, Li Zhang, Aidong Zhang, Murali Ramanath...
BMCBI
2005
190views more  BMCBI 2005»
13 years 7 months ago
An Entropy-based gene selection method for cancer classification using microarray data
Background: Accurate diagnosis of cancer subtypes remains a challenging problem. Building classifiers based on gene expression data is a promising approach; yet the selection of n...
Xiaoxing Liu, Arun Krishnan, Adrian Mondry