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ICSM
2007
IEEE
15 years 9 months ago
A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search
Bioinformaticists use the Basic Local Alignment Search Tool (BLAST) to characterize an unknown sequence by comparing it against a database of known sequences, thus detecting evolu...
Jeremy S. Archuleta, Eli Tilevich, Wu-chun Feng
ISPDC
2010
IEEE
15 years 1 months ago
Resource-Aware Compiler Prefetching for Many-Cores
—Super-scalar, out-of-order processors that can have tens of read and write requests in the execution window place significant demands on Memory Level Parallelism (MLP). Multi- ...
George C. Caragea, Alexandros Tzannes, Fuat Keceli...
ICVS
2009
Springer
15 years 9 months ago
A Fast Joint Bioinspired Algorithm for Optic Flow and Two-Dimensional Disparity Estimation
The faithful detection of the motion and of the distance of the objects in the visual scene is a desirable feature of any artificial vision system designed to operate in unknown e...
Manuela Chessa, Silvio P. Sabatini, Fabio Solari
DAC
2007
ACM
16 years 4 months ago
Global Critical Path: A Tool for System-Level Timing Analysis
An effective method for focusing optimization effort on the most important parts of a design is to examine those elements on the critical path. Traditionally, the critical path is...
Girish Venkataramani, Mihai Budiu, Tiberiu Chelcea...
ESCIENCE
2006
IEEE
15 years 9 months ago
Grid Approach to Embarrassingly Parallel CPU-Intensive Bioinformatics Problems
Bioinformatics algorithms such as sequence alignment methods based on profile-HMM (Hidden Markov Model) are popular but CPU-intensive. If large amounts of data are processed, a s...
Heinz Stockinger, Marco Pagni, Lorenzo Cerutti, La...