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ICSM
2007
IEEE
14 years 3 months ago
A Maintainable Software Architecture for Fast and Modular Bioinformatics Sequence Search
Bioinformaticists use the Basic Local Alignment Search Tool (BLAST) to characterize an unknown sequence by comparing it against a database of known sequences, thus detecting evolu...
Jeremy S. Archuleta, Eli Tilevich, Wu-chun Feng
ISPDC
2010
IEEE
13 years 7 months ago
Resource-Aware Compiler Prefetching for Many-Cores
—Super-scalar, out-of-order processors that can have tens of read and write requests in the execution window place significant demands on Memory Level Parallelism (MLP). Multi- ...
George C. Caragea, Alexandros Tzannes, Fuat Keceli...
ICVS
2009
Springer
14 years 3 months ago
A Fast Joint Bioinspired Algorithm for Optic Flow and Two-Dimensional Disparity Estimation
The faithful detection of the motion and of the distance of the objects in the visual scene is a desirable feature of any artificial vision system designed to operate in unknown e...
Manuela Chessa, Silvio P. Sabatini, Fabio Solari
DAC
2007
ACM
14 years 10 months ago
Global Critical Path: A Tool for System-Level Timing Analysis
An effective method for focusing optimization effort on the most important parts of a design is to examine those elements on the critical path. Traditionally, the critical path is...
Girish Venkataramani, Mihai Budiu, Tiberiu Chelcea...
ESCIENCE
2006
IEEE
14 years 3 months ago
Grid Approach to Embarrassingly Parallel CPU-Intensive Bioinformatics Problems
Bioinformatics algorithms such as sequence alignment methods based on profile-HMM (Hidden Markov Model) are popular but CPU-intensive. If large amounts of data are processed, a s...
Heinz Stockinger, Marco Pagni, Lorenzo Cerutti, La...