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JCC
2008
85views more  JCC 2008»
13 years 9 months ago
Minimal molecular surfaces and their applications
Abstract: This article presents a novel concept, the minimal molecular surface (MMS), for the theoretical modeling of biomolecules. The MMS can be viewed as a result of the surface...
P. W. Bates, G. W. Wei, Shan Zhao
SC
2009
ACM
14 years 4 months ago
FPGA-based acceleration of CHARMM-potential minimization
Energy minimization is an important step in molecular modeling, with applications in molecular docking and in mapping binding sites. Minimization involves repeated evaluation of v...
Bharat Sukhwani, Martin C. Herbordt
COLT
2005
Springer
14 years 2 months ago
Ranking and Scoring Using Empirical Risk Minimization
A general model is proposed for studying ranking problems. We investigate learning methods based on empirical minimization of the natural estimates of the ranking risk. The empiric...
Stéphan Clémençon, Gáb...
ICASSP
2011
IEEE
13 years 27 days ago
Weighted compressed sensing and rank minimization
—We present an alternative analysis of weighted 1 minimization for sparse signals with a nonuniform sparsity model, and extend our results to nuclear norm minimization for matric...
Samet Oymak, M. Amin Khajehnejad, Babak Hassibi
COCOA
2007
Springer
14 years 3 months ago
A New Exact Algorithm for the Two-Sided Crossing Minimization Problem
The Two-Sided Crossing Minimization (TSCM) problem calls for minimizing the number of edge crossings of a bipartite graph where the two sets of vertices are drawn on two parallel l...
Lanbo Zheng, Christoph Buchheim