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» Mining Complex Patterns from Protein Surfaces
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BMCBI
2004
126views more  BMCBI 2004»
13 years 7 months ago
Visualization and analysis of microarray and gene ontology data with treemaps
Background: The increasing complexity of genomic data presents several challenges for biologists. Limited computer monitor views of data complexity and the dynamic nature of data ...
Eric H. Baehrecke, Niem Dang, Ketan Babaria, Ben S...
EMNLP
2010
13 years 6 months ago
A Semi-Supervised Method to Learn and Construct Taxonomies Using the Web
Although many algorithms have been developed to harvest lexical resources, few organize the mined terms into taxonomies. We propose (1) a semi-supervised algorithm that uses a roo...
Zornitsa Kozareva, Eduard H. Hovy
BMCBI
2010
144views more  BMCBI 2010»
13 years 8 months ago
Identifying overrepresented concepts in gene lists from literature: a statistical approach based on Poisson mixture model
Background: Large-scale genomic studies often identify large gene lists, for example, the genes sharing the same expression patterns. The interpretation of these gene lists is gen...
Xin He, Moushumi Sen Sarma, Xu Ling, Brant W. Chee...
BMCBI
2008
173views more  BMCBI 2008»
13 years 8 months ago
Improved machine learning method for analysis of gas phase chemistry of peptides
Background: Accurate peptide identification is important to high-throughput proteomics analyses that use mass spectrometry. Search programs compare fragmentation spectra (MS/MS) o...
Allison Gehrke, Shaojun Sun, Lukasz A. Kurgan, Nat...
KDD
2008
ACM
199views Data Mining» more  KDD 2008»
14 years 8 months ago
Building semantic kernels for text classification using wikipedia
Document classification presents difficult challenges due to the sparsity and the high dimensionality of text data, and to the complex semantics of the natural language. The tradi...
Pu Wang, Carlotta Domeniconi