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» Mining Plausible Patterns from Genomic Data
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DMKD
2003
ACM
96views Data Mining» more  DMKD 2003»
15 years 8 months ago
Using transposition for pattern discovery from microarray data
We analyze expression matrices to identify a priori interesting sets of genes, e.g., genes that are frequently co-regulated. Such matrices provide expression values for given biol...
François Rioult, Jean-François Bouli...
150
Voted
JCB
2006
129views more  JCB 2006»
15 years 3 months ago
GenRate: A Generative Model that Reveals Novel Transcripts in Genome-Tiling Microarray Data
Genome-wide microarray designs containing millions to hundreds of millions of probes are available for a variety of mammals, including mouse and human. These genome tiling arrays ...
Brendan J. Frey, Quaid Morris, Timothy R. Hughes
123
Voted
SADM
2008
90views more  SADM 2008»
15 years 3 months ago
ORIGAMI: A Novel and Effective Approach for Mining Representative Orthogonal Graph Patterns
: In this paper, we introduce the concept of -orthogonal patterns to mine a representative set of graph patterns. Intuitively, two graph patterns are -orthogonal if their similarit...
Vineet Chaoji, Mohammad Al Hasan, Saeed Salem, J&e...
166
Voted
IJAR
2011
118views more  IJAR 2011»
14 years 7 months ago
A sequential pattern mining algorithm using rough set theory
Sequential pattern mining is a crucial but challenging task in many applications, e.g., analyzing the behaviors of data in transactions and discovering frequent patterns in time se...
Ken Kaneiwa, Yasuo Kudo
BMCBI
2010
144views more  BMCBI 2010»
15 years 3 months ago
Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data
Background: The investigation of plant genome structure and evolution requires comprehensive characterization of repetitive sequences that make up the majority of higher plant nuc...
Petr Novák, Pavel Neumann, Jirí Maca...