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» Mining Residue Contacts in Proteins
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BMCBI
2007
147views more  BMCBI 2007»
13 years 7 months ago
Improved residue contact prediction using support vector machines and a large feature set
Background: Predicting protein residue-residue contacts is an important 2D prediction task. It is useful for ab initio structure prediction and understanding protein folding. In s...
Jianlin Cheng, Pierre Baldi
BMCBI
2006
101views more  BMCBI 2006»
13 years 7 months ago
Predicting residue contacts using pragmatic correlated mutations method: reducing the false positives
Background: Predicting residues' contacts using primary amino acid sequence alone is an important task that can guide 3D structure modeling and can verify the quality of the ...
Petras J. Kundrotas, Emil Alexov
BIRD
2007
Springer
120views Bioinformatics» more  BIRD 2007»
14 years 1 months ago
Joining Softassign and Dynamic Programming for the Contact Map Overlap Problem
Comparison of 3-dimensional protein folds is a core problem in molecular biology. The Contact Map Overlap (CMO) scheme provides one of the most common measures for protein structur...
Brijnesh J. Jain, Michael Lappe
BMCBI
2006
130views more  BMCBI 2006»
13 years 7 months ago
Docking protein domains in contact space
Background: Many biological processes involve the physical interaction between protein domains. Understanding these functional associations requires knowledge of the molecular str...
Stefano Lise, Alice Walker-Taylor, David T. Jones
BMCBI
2007
150views more  BMCBI 2007»
13 years 7 months ago
Refining intra-protein contact prediction by graph analysis
Background: Accurate prediction of intra-protein residue contacts from sequence information will allow the prediction of protein structures. Basic predictions of such specific con...
Milana Frenkel-Morgenstern, Rachel Magid, Eran Eya...