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» Modeling, inference and optimization of regulatory networks ...
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IJON
2007
118views more  IJON 2007»
13 years 7 months ago
Time series prediction with recurrent neural networks trained by a hybrid PSO-EA algorithm
To predict the 100 missing values from a time series of 5000 data points, given for the IJCNN 2004 time series prediction competition, recurrent neural networks (RNNs) are trained...
Xindi Cai, Nian Zhang, Ganesh K. Venayagamoorthy, ...
RECOMB
2004
Springer
14 years 7 months ago
Modeling and Analysis of Heterogeneous Regulation in Biological Networks
Abstract. In this study we propose a novel model for the representation of biological networks and provide algorithms for learning model parameters from experimental data. Our appr...
Irit Gat-Viks, Amos Tanay, Ron Shamir
BMCBI
2006
101views more  BMCBI 2006»
13 years 7 months ago
SynTReN: a generator of synthetic gene expression data for design and analysis of structure learning algorithms
Background: The development of algorithms to infer the structure of gene regulatory networks based on expression data is an important subject in bioinformatics research. Validatio...
Tim Van den Bulcke, Koen Van Leemput, Bart Naudts,...
BIOSYSTEMS
2007
115views more  BIOSYSTEMS 2007»
13 years 7 months ago
Evolving fuzzy rules to model gene expression
This paper develops an algorithm that extracts explanatory rules from microarray data, which we treat as time series, using genetic programming (GP) and fuzzy logic. Reverse polis...
Ricardo Linden, Amit Bhaya
IJCNN
2008
IEEE
14 years 1 months ago
Long-term prediction of time series using NNE-based projection and OP-ELM
Abstract— This paper proposes a combination of methodologies based on a recent development –called Extreme Learning Machine (ELM)– decreasing drastically the training time of...
Antti Sorjamaa, Yoan Miche, Robert Weiss, Amaury L...