Ontologies are a well-motivated formal representation to model knowledge needed to extract and encode data from text. Yet, their tight integration with Information Extraction (IE)...
In this paper, we describe the TIMBER XML database system implemented at University of Michigan. TIMBER was one of the first native XML database systems, designed from the ground ...
Mitchell's notion of representation independence is a particularly useful application of Reynolds' relational parametricity -- two different implementations of an abstra...
nd: A key abstraction in representing proteomics knowledge is the notion of unique identifiers for individual entities (e.g. proteins) and the massive graph of relationships among...
Andrew K. Smith, Kei-Hoi Cheung, Kevin Y. Yip, Mar...
Protein-protein interactions (PPI) play a key role in many biological systems. Over the past few years, an explosion in availability of functional biological data obtained from hi...