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» Modeling Relational Data by the Adjacency Model
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ICTAI
2008
IEEE
14 years 5 months ago
Information Extraction as an Ontology Population Task and Its Application to Genic Interactions
Ontologies are a well-motivated formal representation to model knowledge needed to extract and encode data from text. Yet, their tight integration with Information Extraction (IE)...
Alain-Pierre Manine, Érick Alphonse, Philip...
DEBU
2008
125views more  DEBU 2008»
13 years 10 months ago
Querying XML in Timber
In this paper, we describe the TIMBER XML database system implemented at University of Michigan. TIMBER was one of the first native XML database systems, designed from the ground ...
Yuqing Wu, Stelios Paparizos, H. V. Jagadish
POPL
2009
ACM
14 years 11 months ago
State-dependent representation independence
Mitchell's notion of representation independence is a particularly useful application of Reynolds' relational parametricity -- two different implementations of an abstra...
Amal Ahmed, Derek Dreyer, Andreas Rossberg
BMCBI
2007
142views more  BMCBI 2007»
13 years 10 months ago
LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics
nd: A key abstraction in representing proteomics knowledge is the notion of unique identifiers for individual entities (e.g. proteins) and the massive graph of relationships among...
Andrew K. Smith, Kei-Hoi Cheung, Kevin Y. Yip, Mar...
JIB
2006
220views more  JIB 2006»
13 years 10 months ago
An assessment of machine and statistical learning approaches to inferring networks of protein-protein interactions
Protein-protein interactions (PPI) play a key role in many biological systems. Over the past few years, an explosion in availability of functional biological data obtained from hi...
Fiona Browne, Haiying Wang, Huiru Zheng, Francisco...