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RECOMB
2008
Springer
14 years 8 months ago
BayCis: A Bayesian Hierarchical HMM for Cis-Regulatory Module Decoding in Metazoan Genomes
The transcriptional regulatory sequences in metazoan genomes often consist of multiple cis-regulatory modules (CRMs). Each CRM contains locally enriched occurrences of binding site...
Tien-ho Lin, Pradipta Ray, Geir Kjetil Sandve, Sel...
BMCBI
2010
148views more  BMCBI 2010»
13 years 7 months ago
Structuring heterogeneous biological information using fuzzy clustering of k-partite graphs
Background: Extensive and automated data integration in bioinformatics facilitates the construction of large, complex biological networks. However, the challenge lies in the inter...
Mara L. Hartsperger, Florian Blöchl, Volker S...
COCO
2005
Springer
150views Algorithms» more  COCO 2005»
14 years 1 months ago
The Quantum Adversary Method and Classical Formula Size Lower Bounds
We introduce two new complexity measures for Boolean functions, which we name sumPI and maxPI. The quantity sumPI has been emerging through a line of research on quantum query com...
Sophie Laplante, Troy Lee, Mario Szegedy
BMCBI
2006
126views more  BMCBI 2006»
13 years 7 months ago
A joint model of regulatory and metabolic networks
Background: Gene regulation and metabolic reactions are two primary activities of life. Although many works have been dedicated to study each system, the coupling between them is ...
Chen-Hsiang Yeang, Martin Vingron
ATAL
2011
Springer
12 years 7 months ago
A study of computational and human strategies in revelation games
Revelation games are bilateral bargaining games in which agents may choose to truthfully reveal their private information before engaging in multiple rounds of negotiation. They a...
Noam Peled, Ya'akov (Kobi) Gal, Sarit Kraus