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    BMCBI
    2006
    127views more  BMCBI 2006»
    PathogenMIPer: a tool for the design of molecular inversion probes to detect multiple pathogens
    13 years 7 months ago
    PathogenMIPer: a tool for the design of molecular inversion probes to detect multiple pathogens
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    Background: Here we describe PathogenMIPer, a software program for designing molecular inversion probe (MIP) oligonucleotides for use in pathogen identification and detection. The...
    Sreedevi Thiyagarajan, Miloslav Karhanek, Michael ...
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    ENTCS
    2006
    117views more  ENTCS 2006»
    A Formalization of Credit and Responsibility Within the GNDC Schema
    13 years 7 months ago
    A Formalization of Credit and Responsibility Within the GNDC Schema
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    We formally define a notion of credit and responsibility within the Generalized Non Deducibility on Compositions framework. We investigate the validity of our definitions through ...
    Roberto Gorrieri, Fabio Martinelli, Marinella Petr...
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    BMCBI
    2007
    115views more  BMCBI 2007»
    Recognizing protein-protein interfaces with empirical potentials and reduced amino acid alphabets
    13 years 7 months ago
    Recognizing protein-protein interfaces with empirical potentials and reduced amino acid alphabets
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    Background: In structural genomics, an important goal is the detection and classification of protein–protein interactions, given the structures of the interacting partners. We h...
    Guillaume Launay, Raul Mendez, Shoshana J. Wodak, ...
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    BMCBI
    2007
    165views more  BMCBI 2007»
    Automatic reconstruction of a bacterial regulatory network using Natural Language Processing
    13 years 7 months ago
    Automatic reconstruction of a bacterial regulatory network using Natural Language Processing
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    Background: Manual curation of biological databases, an expensive and labor-intensive process, is essential for high quality integrated data. In this paper we report the implement...
    Carlos Rodríguez Penagos, Heladia Salgado, ...
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    BMCBI
    2007
    116views more  BMCBI 2007»
    Clustering protein environments for function prediction: finding PROSITE motifs in 3D
    13 years 7 months ago
    Clustering protein environments for function prediction: finding PROSITE motifs in 3D
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    Background: Structural genomics initiatives are producing increasing numbers of threedimensional (3D) structures for which there is little functional information. Structure-based ...
    Sungroh Yoon, Jessica C. Ebert, Eui-Young Chung, G...
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