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» Models and Methods in Comparative Genomics
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BMCBI
2007
131views more  BMCBI 2007»
13 years 11 months ago
An improved method for identifying functionally linked proteins using phylogenetic profiles
Background: Phylogenetic profiles record the occurrence of homologs of genes across fully sequenced organisms. Proteins with similar profiles are typically components of protein c...
Shawn Cokus, Sayaka Mizutani, Matteo Pellegrini
NIPS
2003
14 years 9 days ago
An MCMC-Based Method of Comparing Connectionist Models in Cognitive Science
Despite the popularity of connectionist models in cognitive science, their performance can often be difficult to evaluate. Inspired by the geometric approach to statistical model ...
Woojae Kim, Daniel J. Navarro, Mark A. Pitt, In Ja...
BMCBI
2006
137views more  BMCBI 2006»
13 years 11 months ago
Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences
Background: Phylogenetic methods which do not rely on multiple sequence alignments are important tools in inferring trees directly from completely sequenced genomes. Here, we exte...
Alexander F. Auch, Stefan R. Henz, Barbara R. Holl...
BMCBI
2007
176views more  BMCBI 2007»
13 years 11 months ago
Genome Expression Pathway Analysis Tool - Analysis and visualization of microarray gene expression data under genomic, proteomic
Background: Regulation of gene expression is relevant to many areas of biology and medicine, in the study of treatments, diseases, and developmental stages. Microarrays can be use...
Markus Weniger, Julia C. Engelmann, Jörg Schu...
BMCBI
2004
144views more  BMCBI 2004»
13 years 10 months ago
GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes
Background: The function of a novel gene product is typically predicted by transitive assignment of annotation from similar sequences. We describe a novel method, GOtcha, for pred...
David M. A. Martin, Matthew Berriman, Geoffrey J. ...