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» Models and Methods in Comparative Genomics
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BMCBI
2006
147views more  BMCBI 2006»
13 years 11 months ago
A hidden Markov model approach for determining expression from genomic tiling micro arrays
Background: Genomic tiling micro arrays have great potential for identifying previously undiscovered coding as well as non-coding transcription. To-date, however, analyses of thes...
Kasper Munch, Paul P. Gardner, Peter Arctander, An...
RECOMB
2004
Springer
14 years 11 months ago
Chromosomal breakpoint re-use in the inference of genome sequence rearrangement
In order to apply gene-order rearrangement algorithms to the comparison of genome sequences, Pevzner and Tesler [9] bypass gene finding and ortholog identification, and use the or...
David Sankoff, Phil Trinh
PKDD
2001
Springer
127views Data Mining» more  PKDD 2001»
14 years 3 months ago
Sentence Filtering for Information Extraction in Genomics, a Classification Problem
In some domains, Information Extraction (IE) from texts requires syntactic and semantic parsing. This analysis is computationally expensive and IE is potentially noisy if it applie...
Claire Nedellec, Mohamed Ould Abdel Vetah, Philipp...
RECOMB
2005
Springer
14 years 11 months ago
Individual Gene Cluster Statistics in Noisy Maps
Abstract. Identification of homologous chromosomal regions is important for understanding evolutionary processes that shape genome evolution, such as genome rearrangements and larg...
Narayanan Raghupathy, Dannie Durand
TCBB
2008
93views more  TCBB 2008»
13 years 11 months ago
2SNP: Scalable Phasing Method for Trios and Unrelated Individuals
Emerging microarray technologies allow affordable typing of very long genome sequences. A key challenge in analyzing of such huge amount of data is scalable and accurate computatio...
Dumitru Brinza, Alexander Zelikovsky