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» Models and Methods in Comparative Genomics
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BMCBI
2005
169views more  BMCBI 2005»
13 years 11 months ago
MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes
Background: Cis-regulatory modules are combinations of regulatory elements occurring in close proximity to each other that control the spatial and temporal expression of genes. Th...
Voichita D. Marinescu, Isaac S. Kohane, Alberto Ri...
NIPS
2008
14 years 12 days ago
An Empirical Analysis of Domain Adaptation Algorithms for Genomic Sequence Analysis
We study the problem of domain transfer for a supervised classification task in mRNA splicing. We consider a number of recent domain transfer methods from machine learning, includ...
Gabriele Schweikert, Christian Widmer, Bernhard Sc...
JBCB
2006
60views more  JBCB 2006»
13 years 11 months ago
Efficient Algorithms and Software for Detection of Full-length Ltr Retrotransposons
LTR retrotransposons constitute one of the most abundant classes of repetitive elements in eukaryotic genomes. In this paper, we present a new algorithm for detection of full-leng...
Anantharaman Kalyanaraman, Srinivas Aluru
BMCBI
2010
161views more  BMCBI 2010»
13 years 8 months ago
LTC: a novel algorithm to improve the efficiency of contig assembly for physical mapping in complex genomes
Background: Physical maps are the substrate of genome sequencing and map-based cloning and their construction relies on the accurate assembly of BAC clones into large contigs that...
Zeev Frenkel, Etienne Paux, David I. Mester, Cathe...
RECOMB
2007
Springer
14 years 11 months ago
Comparative Analysis of Spatial Patterns of Gene Expression in Drosophila melanogaster Imaginal Discs
Determining the precise spatial extent of expression of genes across different tissues, along with knowledge of the biochemical function of the genes is critical for understanding ...
Cyrus L. Harmon, Parvez Ahammad, Ann Hammonds, Ric...