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» Models and Methods in Comparative Genomics
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RECOMB
2006
Springer
14 years 11 months ago
Phylogenetic Profiling of Insertions and Deletions in Vertebrate Genomes
Micro-indels are small insertion or deletion events (indels) that occur during genome evolution. The study of micro-indels is important, both in order to better understand the unde...
Sagi Snir, Lior Pachter
CSB
2005
IEEE
114views Bioinformatics» more  CSB 2005»
14 years 4 months ago
Tree Decomposition Based Fast Search of RNA Structures Including Pseudoknots in Genomes
Searching genomes for RNA secondary structure with computational methods has become an important approach to the annotation of non-coding RNAs. However, due to the lack of effici...
Yinglei Song, Chunmei Liu, Russell L. Malmberg, Fa...
BMCBI
2010
144views more  BMCBI 2010»
13 years 11 months ago
Super-sparse principal component analyses for high-throughput genomic data
Background: Principal component analysis (PCA) has gained popularity as a method for the analysis of highdimensional genomic data. However, it is often difficult to interpret the ...
Donghwan Lee, Woojoo Lee, Youngjo Lee, Yudi Pawita...
LREC
2010
169views Education» more  LREC 2010»
14 years 14 days ago
Using Comparable Corpora to Adapt a Translation Model to Domains
Statistical machine translation (SMT) requires a large parallel corpus, which is available only for restricted language pairs and domains. To expand the language pairs and domains...
Hiroyuki Kaji, Takashi Tsunakawa, Daisuke Okada
ALMOB
2008
95views more  ALMOB 2008»
13 years 11 months ago
A stitch in time: Efficient computation of genomic DNA melting bubbles
Background: It is of biological interest to make genome-wide predictions of the locations of DNA melting bubbles using statistical mechanics models. Computationally, this poses th...
Eivind Tøstesen