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» Models and Methods in Comparative Genomics
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BMCBI
2011
13 years 2 months ago
Software comparison for evaluating genomic copy number variation for Affymetrix 6.0 SNP array platform
Background: Copy number data are routinely being extracted from genome-wide association study chips using a variety of software. We empirically evaluated and compared four freely-...
Jeanette E. Eckel-Passow, Elizabeth J. Atkinson, S...
AGTIVE
2007
Springer
14 years 3 months ago
Model-Driven Software Development with Graph Transformations: A Comparative Case Study
Abstract. Significant achievements have been made in the design and implementation of languages and tools for graph transformation systems. However, many other competing approaches...
Thomas Buchmann, Alexander Dotor, Sabrina Uhrig, B...
RECOMB
2004
Springer
14 years 11 months ago
Finding approximate tandem repeats in genomic sequences
An efficient algorithm is presented for detecting approximate tandem repeats in genomic sequences. The algorithm is based on a flexible statistical model which allows a wide range...
Ydo Wexler, Zohar Yakhini, Yechezkel Kashi, Dan Ge...
TREC
2007
14 years 5 days ago
Exploring Traits of Adjectives to Predict Polarity Opinion in Blogs and Semantic Filters in Genomics
: This paper presents the results of our team in the Genomics and Blog tracks in TREC 2007. We used the language model implementation provided by Indri for both tracks. For the BLO...
Miguel E. Ruiz, Ying Sun, Jianqiang Wang, Hongfang...
BIOINFORMATICS
2004
86views more  BIOINFORMATICS 2004»
13 years 11 months ago
Transposable element annotation of the rice genome
Motivation: The high content of repetitive sequences in the genomes of many higher eukaryotes renders the task of annotating them computationally intensive. Presently, the only wi...
Nikoleta Juretic, Thomas E. Bureau, Richard M. Bru...