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» Models and Methods in Comparative Genomics
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BMCBI
2008
80views more  BMCBI 2008»
13 years 11 months ago
Computational evaluation of TIS annotation for prokaryotic genomes
Background: Accurate annotation of translation initiation sites (TISs) is essential for understanding the translation initiation mechanism. However, the reliability of TIS annotat...
Gang-Qing Hu, Xiaobin Zheng, Li-Ning Ju, Huaiqiu Z...
BMCBI
2007
146views more  BMCBI 2007»
13 years 11 months ago
Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data
Background: Transcriptional modules (TM) consist of groups of co-regulated genes and transcription factors (TF) regulating their expression. Two high-throughput (HT) experimental ...
Xiangdong Liu, Walter J. Jessen, Siva Sivaganesan,...
BMCBI
2008
130views more  BMCBI 2008»
13 years 11 months ago
A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm
Background: The process of horizontal gene transfer (HGT) is believed to be widespread in Bacteria and Archaea, but little comparative data is available addressing its occurrence ...
Sheila Podell, Terry Gaasterland, Eric E. Allen
CIE
2005
Springer
14 years 4 months ago
How to Compare the Power of Computational Models
We argue that there is currently no satisfactory general framework for comparing the extensional computational power of arbitrary computational models operating over arbitrary doma...
Udi Boker, Nachum Dershowitz
MICCAI
2005
Springer
15 years 1 days ago
Hybrid Segmentation Framework for Tissue Images Containing Gene Expression Data
Associating speci c gene activity with speci c functional locations in the brain anatomy results in a greater understanding of the role of the gene's products. To perform such...
Musodiq Bello, Tao Ju, Joe D. Warren, James Carson...