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» Models and Methods in Comparative Genomics
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BMCBI
2007
125views more  BMCBI 2007»
13 years 11 months ago
Bayesian meta-analysis models for microarray data: a comparative study
Background: With the growing abundance of microarray data, statistical methods are increasingly needed to integrate results across studies. Two common approaches for meta-analysis...
Erin M. Conlon, Joon J. Song, Anna Liu
COSIT
2009
Springer
130views GIS» more  COSIT 2009»
14 years 5 months ago
Comparing Relations with a Multi-holed Region
Relation models have treated multi-holed regions relations either the same as hole-free regions relations, loosing this way the peculiarities of the holed topology, or with methods...
Maria Vasardani, Max J. Egenhofer
BMCBI
2008
144views more  BMCBI 2008»
13 years 11 months ago
Local conservation scores without a priori assumptions on neutral substitution rates
Background: Comparative genomics aims to detect signals of evolutionary conservation as an indicator of functional constraint. Surprisingly, results of the ENCODE project revealed...
Janis Dingel, Pavol Hanus, Niccolò Leonardi...
BMCBI
2010
111views more  BMCBI 2010»
13 years 11 months ago
Dynamic probe selection for studying microbial transcriptome with high-density genomic tiling microarrays
Background: Current commercial high-density oligonucleotide microarrays can hold millions of probe spots on a single microscopic glass slide and are ideal for studying the transcr...
Hedda Høvik, Tsute Chen
BMCBI
2010
118views more  BMCBI 2010»
13 years 11 months ago
Bacillus anthracis genome organization in light of whole transcriptome sequencing
Emerging knowledge of whole prokaryotic transcriptomes could validate a number of theoretical concepts introduced in the early days of genomics. What are the rules connecting gene...
Jeffrey Martin, Wenhan Zhu, Karla D. Passalacqua, ...