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    BMCBI
    2007
    169views more  BMCBI 2007»
    The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
    13 years 11 months ago
    The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
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    Background: In Archeae and Bacteria, the repeated elements called CRISPRs for "clustered regularly interspaced short palindromic repeats" are believed to participate in ...
    Ibtissem Grissa, Gilles Vergnaud, Christine Pource...
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    BMCBI
    2007
    165views more  BMCBI 2007»
    Automatic reconstruction of a bacterial regulatory network using Natural Language Processing
    13 years 11 months ago
    Automatic reconstruction of a bacterial regulatory network using Natural Language Processing
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    Background: Manual curation of biological databases, an expensive and labor-intensive process, is essential for high quality integrated data. In this paper we report the implement...
    Carlos Rodríguez Penagos, Heladia Salgado, ...
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    BMCBI
    2007
    116views more  BMCBI 2007»
    Clustering protein environments for function prediction: finding PROSITE motifs in 3D
    13 years 11 months ago
    Clustering protein environments for function prediction: finding PROSITE motifs in 3D
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    Background: Structural genomics initiatives are producing increasing numbers of threedimensional (3D) structures for which there is little functional information. Structure-based ...
    Sungroh Yoon, Jessica C. Ebert, Eui-Young Chung, G...
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    BMCBI
    2007
    133views more  BMCBI 2007»
    Semi-supervised learning for the identification of syn-expressed genes from fused microarray and in situ image data
    13 years 11 months ago
    Semi-supervised learning for the identification of syn-expressed genes from fused microarray and in situ image data
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    Background: Gene expression measurements during the development of the fly Drosophila melanogaster are routinely used to find functional modules of temporally co-expressed genes. ...
    Ivan G. Costa, Roland Krause, Lennart Opitz, Alexa...
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    IJHPCA
    2008
    131views more  IJHPCA 2008»
    De Novo Ultrascale Atomistic Simulations On High-End Parallel Supercomputers
    13 years 11 months ago
    De Novo Ultrascale Atomistic Simulations On High-End Parallel Supercomputers
    Download  cacs.usc.edu
    We present a de novo hierarchical simulation framework for first-principles based predictive simulations of materials and their validation on high-end parallel supercomputers and ...
    Aiichiro Nakano, Rajiv K. Kalia, Ken-ichi Nomura, ...
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