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» Modular Complexity Analysis via Relative Complexity
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BMCBI
2007
133views more  BMCBI 2007»
13 years 10 months ago
Semantic integration to identify overlapping functional modules in protein interaction networks
Background: The systematic analysis of protein-protein interactions can enable a better understanding of cellular organization, processes and functions. Functional modules can be ...
Young-Rae Cho, Woochang Hwang, Murali Ramanathan, ...
JCB
2008
159views more  JCB 2008»
13 years 10 months ago
BayesMD: Flexible Biological Modeling for Motif Discovery
We present BayesMD, a Bayesian Motif Discovery model with several new features. Three different types of biological a priori knowledge are built into the framework in a modular fa...
Man-Hung Eric Tang, Anders Krogh, Ole Winther
TASE
2008
IEEE
13 years 10 months ago
Modeling and Supervisory Control of Railway Networks Using Petri Nets
In this paper we deal with the problem of modeling railway networks with Petri nets so as to apply the theory of supervisory control for discrete event systems to automatically de...
Alessandro Giua, Carla Seatzu
SIGSOFT
2010
ACM
13 years 8 months ago
Managing technical debt in software-reliant systems
Delivering increasingly complex software-reliant systems demands better ways to manage the long-term effects of shortterm expedients. The technical debt metaphor is gaining signif...
Nanette Brown, Yuanfang Cai, Yuepu Guo, Rick Kazma...
FOCS
2006
IEEE
14 years 4 months ago
On the Compressibility of NP Instances and Cryptographic Applications
We study compression that preserves the solution to an instance of a problem rather than preserving the instance itself. Our focus is on the compressibility of NP decision problem...
Danny Harnik, Moni Naor