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HPCS
2007
IEEE
14 years 2 months ago
Utilizing Averaged Configuations from Molecular Dynamics Simulation Trajectories
One of the challenges in the large-scale simulations required for many molecular systems (such as those of biological interested) is the recording, monitoring and visualization of...
Peter G. Kusalik, K. Gillis, J. Vatamanu
FCCM
2000
IEEE
133views VLSI» more  FCCM 2000»
14 years 4 days ago
Configuration Caching Management Techniques for Reconfigurable Computing
Although run-time reconfigurable systems have been shown to achieve very high performance, the speedups over traditional microprocessor systems are limited by the cost of configur...
Zhiyuan Li, Katherine Compton, Scott Hauck
CPHYSICS
2008
121views more  CPHYSICS 2008»
13 years 7 months ago
A scalable parallel algorithm for large-scale reactive force-field molecular dynamics simulations
A scalable parallel algorithm has been designed to perform multimillion-atom molecular dynamics (MD) simulations, in which first principlesbased reactive force fields (ReaxFF) des...
Ken-ichi Nomura, Rajiv K. Kalia, Aiichiro Nakano, ...
FPL
2009
Springer
162views Hardware» more  FPL 2009»
13 years 11 months ago
Efficient particle-pair filtering for acceleration of molecular dynamics simulation
The acceleration of molecular dynamics (MD) simulations using high performance reconfigurable computing (HPRC) has been much studied. Given the intense competition from multicore...
Matt Chiu, Martin C. Herbordt
IPPS
2007
IEEE
14 years 2 months ago
A General Purpose Partially Reconfigurable Processor Simulator (PReProS)
An innovative technique to model and simulate partial and dynamic reconfigurable processors is presented in this paper. The basis for development is a SystemC kernel modified for ...
Alisson Vasconcelos De Brito, Matthias Kühnle...