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2009
ACM
15 years 11 months ago
Enabling high-fidelity neutron transport simulations on petascale architectures
The UNIC code is being developed as part of the DOE’s Nuclear Energy Advanced Modeling and Simulation (NEAMS) program. UNIC is an unstructured, deterministic neutron transport c...
Dinesh K. Kaushik, Micheal Smith, Allan Wollaber, ...
IPPS
2008
IEEE
15 years 11 months ago
Overcoming scaling challenges in biomolecular simulations across multiple platforms
NAMD† is a portable parallel application for biomolecular simulations. NAMD pioneered the use of hybrid spatial and force decomposition, a technique now used by most scalable pr...
Abhinav Bhatele, Sameer Kumar, Chao Mei, James C. ...
BMCBI
2006
85views more  BMCBI 2006»
15 years 4 months ago
Searching for interpretable rules for disease mutations: a simulated annealing bump hunting strategy
Background: Understanding how amino acid substitutions affect protein functions is critical for the study of proteins and their implications in diseases. Although methods have bee...
Rui Jiang, Hua Yang, Fengzhu Sun, Ting Chen
ICDCS
2006
IEEE
15 years 10 months ago
Elastic Routing Table with Provable Performance for Congestion Control in DHT Networks
Distributed hash table (DHT) networks based on consistent hashing functions have an inherent load balancing problem. The problem becomes more severe due to the heterogeneity of ne...
Haiying Shen, Cheng-Zhong Xu
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PPAM
2005
Springer
15 years 10 months ago
A Web Computing Environment for Parallel Algorithms in Java
We present a web computing library (PUBWCL) in Java that allows to execute tightly coupled, massively parallel algorithms in the bulk-synchronous (BSP) style on PCs distributed ove...
Olaf Bonorden, Joachim Gehweiler, Friedhelm Meyer ...