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» Motif patterns in 2D
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139
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SAC
2009
ACM
15 years 10 months ago
A new protein motif extraction framework based on constrained co-clustering
Signal finding (pattern discovery) in biological sequences is a fundamental problem in both computer science and molecular biology. Many approaches have been proposed for extract...
Francesca Cordero, Alessia Visconti, Marco Botta
140
Voted
BMCBI
2007
141views more  BMCBI 2007»
15 years 3 months ago
HeliCis: a DNA motif discovery tool for colocalized motif pairs with periodic spacing
Background: Correct temporal and spatial gene expression during metazoan development relies on combinatorial interactions between different transcription factors. As a consequence...
Erik Larsson, Per Lindahl, Petter Mostad
147
Voted
BMCBI
2008
126views more  BMCBI 2008»
15 years 3 months ago
c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
Background: Computational methods for characterizing novel transcription factor binding sites search for sequence patterns or "motifs" that appear repeatedly in genomic ...
Katerina Kechris, Hao Li
BIBE
2006
IEEE
15 years 9 months ago
Extending Pattern Branching to Handle Challenging Instances
We consider the planted motif search problem, a problem that arises from the need to find transcription factor-binding sites in genomic information. One of the fastest non-exact a...
Jaime Davila, Sanguthevar Rajasekaran
130
Voted
JIIS
2011
99views more  JIIS 2011»
14 years 10 months ago
Mining transposed motifs in music
The discovery of frequent musical patterns (motifs) is a relevant problem in musicology. This paper introduces an unsupervised algorithm to address this problem in symbolically-rep...
Aída Jiménez, Miguel Molina-Solana, ...