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BIBM
2008
IEEE
110views Bioinformatics» more  BIBM 2008»
14 years 2 months ago
Genome Alignments Using MPI-LAGAN
We develop a parallel algorithm for a widely used whole genome alignment method called LAGAN. We use the MPI-based protocol to develop parallel solutions for two phases of the alg...
Ruinan Zhang, Huzefa Rangwala, George Karypis
PVLDB
2010
119views more  PVLDB 2010»
13 years 6 months ago
An Architecture for Parallel Topic Models
This paper describes a high performance sampling architecture for inference of latent topic models on a cluster of workstations. Our system is faster than previous work by over an...
Alexander J. Smola, Shravan Narayanamurthy
PODC
2011
ACM
12 years 10 months ago
On the power of hardware transactional memory to simplify memory management
Dynamic memory management is a significant source of complexity in the design and implementation of practical concurrent data structures. We study how hardware transactional memo...
Aleksandar Dragojevic, Maurice Herlihy, Yossi Lev,...
IPPS
2010
IEEE
13 years 5 months ago
Executing task graphs using work-stealing
Abstract--NABBIT is a work-stealing library for execution of task graphs with arbitrary dependencies which is implemented as a library for the multithreaded programming language Ci...
Kunal Agrawal, Charles E. Leiserson, Jim Sukha
PPOPP
2005
ACM
14 years 1 months ago
A linear-time algorithm for optimal barrier placement
We want to perform compile-time analysis of an SPMD program and place barriers in it to synchronize it correctly, minimizing the runtime cost of the synchronization. This is the b...
Alain Darte, Robert Schreiber