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» Multiple Genome Alignment: Chaining Algorithms Revisited
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ICCS
2005
Springer
14 years 1 months ago
Generating Parallel Algorithms for Cluster and Grid Computing
We revisit and use the dependence transformation method to generate parallel algorithms suitable for cluster and grid computing. We illustrate this method in two applications: to o...
Ulisses Kendi Hayashida, Kunio Okuda, Jairo Panett...
BMCBI
2007
127views more  BMCBI 2007»
13 years 7 months ago
A Latent Variable Approach for Meta-Analysis of Gene Expression Data from Multiple Microarray Experiments
Background: With the explosion in data generated using microarray technology by different investigators working on similar experiments, it is of interest to combine results across...
Hyungwon Choi, Ronglai Shen, Arul M. Chinnaiyan, D...
CEC
2008
IEEE
14 years 2 months ago
A self-adaptive cellular memetic algorithm for the DNA fragment assembly problem
Abstract— The DNA fragment assembly problem is to reconstruct a DNA chain from multiple fragments that have previously been sequenced in a laboratory. This is a critical step in ...
Bernabé Dorronsoro, Enrique Alba, Gabriel L...
BMCBI
2008
114views more  BMCBI 2008»
13 years 7 months ago
Dinucleotide controlled null models for comparative RNA gene prediction
Background: Comparative prediction of RNA structures can be used to identify functional noncoding RNAs in genomic screens. It was shown recently by Babak et al. [BMC Bioinformatic...
Tanja Gesell, Stefan Washietl
ISMB
1998
13 years 9 months ago
Sequence Assembly Validation by Multiple Restriction Digest Fragment Coverage Analysis
DNA sequence analysis depends on the accurate assembly of fragment reads for the determination of a consensus sequence. This report examines the possibility of analyzing multiple,...
Eric C. Rouchka, David J. States