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BMCBI
2007
166views more  BMCBI 2007»
13 years 10 months ago
Data handling strategies for high throughput pyrosequencers
Background: New high throughput pyrosequencers such as the 454 Life Sciences GS 20 are capable of massively parallelizing DNA sequencing providing an unprecedented rate of output ...
Gabriele A. Trombetti, Raoul J. P. Bonnal, Ermanno...
BMCBI
2007
142views more  BMCBI 2007»
13 years 10 months ago
LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics
nd: A key abstraction in representing proteomics knowledge is the notion of unique identifiers for individual entities (e.g. proteins) and the massive graph of relationships among...
Andrew K. Smith, Kei-Hoi Cheung, Kevin Y. Yip, Mar...
SIGMOD
2008
ACM
113views Database» more  SIGMOD 2008»
13 years 10 months ago
Supporting OLAP operations over imperfectly integrated taxonomies
OLAP is an important tool in decision support. With the help of domain knowledge, such as hierarchies of attribute values, OLAP helps the user observe the effects of various decis...
Yan Qi 0002, K. Selçuk Candan, Jun'ichi Tat...
TCBB
2008
95views more  TCBB 2008»
13 years 10 months ago
Solving the Problem of Trans-Genomic Query with Alignment Tables
Abstract-- The trans-genomic query (TGQ) problem -- enabling the free query of biological information, even across genomes -- is a central challenge facing bioinformatics. Solution...
Douglas Stott Parker Jr., Ruey-Lung Hsiao, Yi Xing...
BMCBI
2005
94views more  BMCBI 2005»
13 years 10 months ago
Measuring similarities between transcription factor binding sites
Background: Collections of transcription factor binding profiles (Transfac, Jaspar) are essential to identify regulatory elements in DNA sequences. Subsets of highly similar profi...
Szymon M. Kielbasa, Didier Gonze, Hanspeter Herzel