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» Multiple RNA Structure Alignment
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SSDBM
2007
IEEE
131views Database» more  SSDBM 2007»
14 years 2 months ago
Mining RNA Tertiary Motifs with Structure Graphs
We present a novel application of graph database mining to identify tertiary motifs in RNA structures. In od, we abstract an RNA molecule as a labeled graph and use a frequent sub...
Xueyi Wang, Jun Huan, Jack Snoeyink, Wei Wang 0010
CPM
2006
Springer
145views Combinatorics» more  CPM 2006»
14 years 9 days ago
Approximation of RNA Multiple Structural Alignment
Abstract. In the context of non-coding RNA (ncRNA) multiple structural alignment, Davydov and Batzoglou introduced in [7] the problem of finding the largest nested linear graph tha...
Marcin Kubica, Romeo Rizzi, Stéphane Vialet...
BMCBI
2007
153views more  BMCBI 2007»
13 years 8 months ago
Can Clustal-style progressive pairwise alignment of multiple sequences be used in RNA secondary structure prediction?
Background: In ribonucleic acid (RNA) molecules whose function depends on their final, folded three-dimensional shape (such as those in ribosomes or spliceosome complexes), the se...
Amelia B. Bellamy-Royds, Marcel Turcotte
BMCBI
2005
162views more  BMCBI 2005»
13 years 8 months ago
Accelerated probabilistic inference of RNA structure evolution
Background: Pairwise stochastic context-free grammars (Pair SCFGs) are powerful tools for evolutionary analysis of RNA, including simultaneous RNA sequence alignment and secondary...
Ian Holmes