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CORR
2006
Springer
159views Education» more  CORR 2006»
13 years 10 months ago
Structural Alignments of pseudo-knotted RNA-molecules in polynomial time
An RNA molecule is structured on several layers. The primary and most obvious structure is its sequence of bases, i.e. a word over the alphabet {A, C, G, U}. The higher structure i...
Michael Brinkmeier
BMCBI
2007
183views more  BMCBI 2007»
13 years 10 months ago
Considerations in the identification of functional RNA structural elements in genomic alignments
Background: Accurate identification of novel, functional noncoding (nc) RNA features in genome sequence has proven more difficult than for exons. Current algorithms identify and s...
Tomas Babak, Benjamin J. Blencowe, Timothy R. Hugh...
BMCBI
2011
13 years 4 months ago
PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment
Background: The Monte Carlo simulation of sequence evolution is routinely used to assess the performance of phylogenetic inference methods and sequence alignment algorithms. Progr...
Botond Sipos, Tim Massingham, Gregory E. Jordan, N...
AEI
2004
150views more  AEI 2004»
13 years 9 months ago
Ant colony optimization techniques for the vehicle routing problem
This research applies the meta-heuristic method of ant colony optimization (ACO) to an established set of vehicle routing problems (VRP). The procedure simulates the decision-maki...
John E. Bell, Patrick R. McMullen
JCDL
2006
ACM
176views Education» more  JCDL 2006»
14 years 3 months ago
A hierarchical, HMM-based automatic evaluation of OCR accuracy for a digital library of books
A number of projects are creating searchable digital libraries of printed books. These include the Million Book Project, the Google Book project and similar efforts from Yahoo an...
Shaolei Feng, R. Manmatha