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BMCBI
2010
138views more  BMCBI 2010»
13 years 11 months ago
Sigma-2: Multiple sequence alignment of non-coding DNA via an evolutionary model
Background: While most multiple sequence alignment programs expect that all or most of their input is known to be homologous, and penalise insertions and deletions, this is not a ...
Gayathri Jayaraman, Rahul Siddharthan
JCB
2002
116views more  JCB 2002»
13 years 10 months ago
A Novel Approach to Remote Homology Detection: Jumping Alignments
We describe a new algorithm for protein classi cation and the detection of remote homologs. The rationale is to exploit both vertical and horizontal information of a multiple alig...
Rainer Spang, Marc Rehmsmeier, Jens Stoye
LREC
2010
152views Education» more  LREC 2010»
14 years 10 days ago
Heuristic Word Alignment with Parallel Phrases
This paper presents a method for word alignment that uses parallel phrases from manually word aligned sentence pairs to align words in new texts. Experiments on an English
Maria Holmqvist
BIOINFORMATICS
2007
77views more  BIOINFORMATICS 2007»
13 years 11 months ago
MSQT for choosing SNP assays from multiple DNA alignments
Page 1 of 2MSQT for choosing SNP assays from multiple DNA alignments -- Warthmann et al. 23 (20): ... http://bioinformatics.oxfordjournals.org/cgi/content/abstract/23/20/2784
Norman Warthmann, Joffrey Fitz, Detlef Weigel
APBC
2004
14 years 8 days ago
EMAGEN: An Efficient Approach to Multiple Whole Genome Alignment
Following advances in biotechnology, many new whole genome sequences are becoming available every year. A lot of useful information can be derived from the alignment and compariso...
Jitender S. Deogun, Jingyi Yang, Fangrui Ma