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CPM
1993
Springer
154views Combinatorics» more  CPM 1993»
14 years 3 months ago
On Suboptimal Alignments of Biological Sequences
It is widely accepted that the optimal alignment between a pair of proteins or nucleic acid sequences that minimizes the edit distance may not necessarily re ect the correct biolog...
Dalit Naor, Douglas L. Brutlag
BMCBI
2006
92views more  BMCBI 2006»
13 years 11 months ago
A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes
Background: Jumping alignments have recently been proposed as a strategy to search a given multiple sequence alignment A against a database. Instead of comparing a database sequen...
Anne-Kathrin Schultz, Ming Zhang, Thomas Leitner, ...
BMCBI
2007
120views more  BMCBI 2007»
13 years 11 months ago
Phylo-mLogo: an interactive and hierarchical multiple-logo visualization tool for alignment of many sequences
Background: When aligning several hundreds or thousands of sequences, such as epidemic virus sequences or homologous/orthologous sequences of some big gene families, to reconstruc...
Arthur Chun-Chieh Shih, D. T. Lee, Chin-Lin Peng, ...
NAR
2007
152views more  NAR 2007»
13 years 10 months ago
COMPASS server for remote homology inference
COMPASS is a method for homology detection and local alignment construction based on the comparison of multiple sequence alignments (MSAs). The method derives numerical profiles f...
Ruslan Sadreyev, Ming Tang, Bong-Hyun Kim, Nick V....
CVPR
2012
IEEE
12 years 1 months ago
Multi-video browsing and summarization
We propose a method for browsing multiple videos with a common theme, such as the result of a search query on a video sharing website, or videos of an event covered by multiple ca...
Kevin Dale, Eli Shechtman, Shai Avidan, Hanspeter ...