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BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
14 years 5 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng
IPTPS
2005
Springer
14 years 4 months ago
Clustering in P2P Exchanges and Consequences on Performances
— We propose here an analysis of a rich dataset which gives an exhaustive and dynamic view of the exchanges processed in a running eDonkey system. We focus on correlation in term...
Stevens Le-Blond, Jean-Loup Guillaume, Matthieu La...
HPDC
2000
IEEE
14 years 3 months ago
Performance Evaluation of a Firewall-Compliant Globus-based Wide-Area Cluster System
In this paper, we present a performance evaluation of a wide-area cluster system based on a rewallenabled Globus metacomputing toolkit. In order to establish communication links ...
Yoshio Tanaka, Motonori Hirano, Mitsuhisa Sato, Hi...
FPL
2010
Springer
188views Hardware» more  FPL 2010»
13 years 8 months ago
SeqHive: A Reconfigurable Computer Cluster for Genome Re-sequencing
We demonstrate how Field Programmable Gate Arrays (FPGAs) may be used to address the computing challenges associated with assembling genome sequences from recent ultra-high-through...
Kristian Stevens, Henry Chen, Terry Filiba, Peter ...
CF
2007
ACM
14 years 2 months ago
An analysis of the effects of miss clustering on the cost of a cache miss
In this paper we describe a new technique, called pipeline spectroscopy, and use it to measure the cost of each cache miss. The cost of a miss is displayed (graphed) as a histogra...
Thomas R. Puzak, Allan Hartstein, Philip G. Emma, ...