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DNA
2011
Springer
227views Bioinformatics» more  DNA 2011»
12 years 10 months ago
Cooperative Assembly Systems
Several molecular systems form large-scale objects. One would like to understand their assembly and how this assembly is regulated. As a first step, we investigate the phase trans...
Vincent Danos, Heinz Koeppl, John Wilson-Kanamori
BIBE
2007
IEEE
128views Bioinformatics» more  BIBE 2007»
14 years 4 months ago
QOMA2: Optimizing the alignment of many sequences
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
Xu Zhang, Tamer Kahveci
PPOPP
2006
ACM
14 years 4 months ago
Fast and transparent recovery for continuous availability of cluster-based servers
Recently there has been renewed interest in building reliable servers that support continuous application operation. Besides maintaining system state consistent after a failure, o...
Rosalia Christodoulopoulou, Kaloian Manassiev, Ang...
EXPCS
2007
14 years 3 days ago
Pipeline spectroscopy
Pipeline Spectroscopy is a new technique that allows us to measure the cost of each cache miss. The cost of a miss is displayed (graphed) as a histogram, which represents a precis...
Thomas R. Puzak, Allan Hartstein, Philip G. Emma, ...
SDM
2007
SIAM
187views Data Mining» more  SDM 2007»
13 years 11 months ago
Topic Models over Text Streams: A Study of Batch and Online Unsupervised Learning
Topic modeling techniques have widespread use in text data mining applications. Some applications use batch models, which perform clustering on the document collection in aggregat...
Arindam Banerjee, Sugato Basu