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BMCBI
2010
135views more  BMCBI 2010»
13 years 10 months ago
Simple and flexible classification of gene expression microarrays via Swirls and Ripples
Background: A simple classification rule with few genes and parameters is desirable when applying a classification rule to new data. One popular simple classification rule, diagon...
Stuart G. Baker
BMCBI
2007
156views more  BMCBI 2007»
13 years 10 months ago
Large-scale clustering of CAGE tag expression data
Background: Recent analyses have suggested that many genes possess multiple transcription start sites (TSSs) that are differentially utilized in different tissues and cell lines. ...
Kazuro Shimokawa, Yuko Okamura-Oho, Takio Kurita, ...
BMCBI
2010
165views more  BMCBI 2010»
13 years 10 months ago
Bayesian integrated modeling of expression data: a case study on RhoG
Background: DNA microarrays provide an efficient method for measuring activity of genes in parallel and even covering all the known transcripts of an organism on a single array. T...
Rashi Gupta, Dario Greco, Petri Auvinen, Elja Arja...
BMCBI
2011
13 years 5 months ago
RedundancyMiner: De-replication of redundant GO categories in microarray and proteomics analysis
Background: The Gene Ontology (GO) Consortium organizes genes into hierarchical categories based on biological process, molecular function and subcellular localization. Tools such...
Barry Zeeberg, Hongfang Liu, Ari B. Kahn, Martin E...
ICANN
2005
Springer
14 years 3 months ago
High-Throughput Multi-dimensional Scaling (HiT-MDS) for cDNA-Array Expression Data
Multidimensional Scaling (MDS) is a powerful dimension reduction technique for embedding high-dimensional data into a lowdimensional target space. Thereby, the distance relationshi...
Marc Strickert, Stefan Teichmann, Nese Sreenivasul...