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» Negative Information for Motif Discovery
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BMCBI
2007
190views more  BMCBI 2007»
13 years 10 months ago
Discriminative motif discovery in DNA and protein sequences using the DEME algorithm
Background: Motif discovery aims to detect short, highly conserved patterns in a collection of unaligned DNA or protein sequences. Discriminative motif finding algorithms aim to i...
Emma Redhead, Timothy L. Bailey
PSB
2004
13 years 11 months ago
Negative Information for Motif Discovery
Ken T. Takusagawa, David K. Gifford
BMCBI
2007
145views more  BMCBI 2007»
13 years 9 months ago
Improved benchmarks for computational motif discovery
Background: An important step in annotation of sequenced genomes is the identification of transcription factor binding sites. More than a hundred different computational methods h...
Geir Kjetil Sandve, Osman Abul, Vegard Walseng, Fi...
KES
2005
Springer
14 years 3 months ago
Generalized Composite Motif Discovery
This paper discusses a general algorithm for the discovery of motif combinations. From a large number of input motifs, discovered by any single motif discovery tool, our algorithm ...
Geir Kjetil Sandve, Finn Drabløs
BMCBI
2010
124views more  BMCBI 2010»
13 years 10 months ago
The value of position-specific priors in motif discovery using MEME
Background: Position-specific priors have been shown to be a flexible and elegant way to extend the power of Gibbs sampler-based motif discovery algorithms. Information of many ty...
Timothy L. Bailey, Mikael Bodén, Tom Whitin...