429 search results - page 10 / 86 » New Algorithms for SIMD Alignment |
JCB
2000
13 years 7 months ago
2000
For aligning DNA sequences that differ only by sequencing errors, or by equivalent errors from other sources, a greedy algorithm can be much faster than traditional dynamic progra...
ICCS
2005
Springer
14 years 1 months ago
2005
Springer
Abstract. There are several computer programs that align mRNA with its genomic counterpart to determine exon boundaries. Though most of these programs perform such alignment effici...
RECOMB
2006
Springer
14 years 8 months ago
2006
Springer
For as long as biologists have been computing alignments of sequences, the question of what values to use for scoring substitutions and gaps has persisted. While some choices for s...
BMCBI
2011
12 years 11 months ago
2011
Background: Pairwise sequence alignment methods are widely used in biological research. The increasing number of sequences is perceived as one of the upcoming challenges for seque...
CSB
2004
IEEE
13 years 11 months ago
2004
IEEE
We describe a novel hardware architecture for genomic and proteomic sequence alignment which achieves a speed-up of two to three orders of magnitude over Smith-Waterman dynamic pr...