429 search results - page 19 / 86 » New Algorithms for SIMD Alignment |
BIBE
2007
IEEE
14 years 2 months ago
2007
IEEE
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
COLING
2002
13 years 7 months ago
2002
A new statistical method called "bilingual chunking" for structure alignment is proposed. Different with the existing approaches which align hierarchical structures like...
BMCBI
2002
13 years 7 months ago
2002
Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...
BIBM
2007
IEEE
14 years 2 months ago
2007
IEEE
In this paper, we present an algorithm to simultaneously align three biological sequences with affine gap model and infer their common ancestral sequence. Our algorithm can be fu...
SSDBM
2006
IEEE
14 years 1 months ago
2006
IEEE
Multiple sequence alignment represents a class of powerful bioinformatics tools with many uses in computational biology ranging from discovery of characteristic motifs and conserv...