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WWW
2011
ACM
13 years 4 months ago
Automatic construction of a context-aware sentiment lexicon: an optimization approach
The explosion of Web opinion data has made essential the need for automatic tools to analyze and understand people’s sentiments toward different topics. In most sentiment analy...
Yue Lu, Malú Castellanos, Umeshwar Dayal, C...
ISBI
2011
IEEE
13 years 1 months ago
Network cycle features: Application to computer-aided Gleason grading of prostate cancer histopathological images
Features extracted from cell networks have become popular tools in histological image analysis. However, existing features do not take sufficient advantage of the cycle structure...
Parmeshwar Khurd, Leo Grady, Ali Kamen, Summer Gib...
BMCBI
2011
13 years 1 months ago
Structator: fast index-based search for RNA sequence-structure patterns
Background: The secondary structure of RNA molecules is intimately related to their function and often more conserved than the sequence. Hence, the important task of searching dat...
Fernando Meyer, Stefan Kurtz, Rolf Backofen, Sebas...
BMCBI
2011
13 years 1 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
BMCBI
2011
13 years 1 months ago
PhyloMap: an algorithm for visualizing relationships of large sequence data sets and its application to the influenza A virus ge
Background: Results of phylogenetic analysis are often visualized as phylogenetic trees. Such a tree can typically only include up to a few hundred sequences. When more than a few...
Jiajie Zhang, Amir Madany Mamlouk, Thomas Martinet...
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