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» New algorithms for efficient parallel string comparison
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BMCBI
2010
190views more  BMCBI 2010»
13 years 7 months ago
A parallel and incremental algorithm for efficient unique signature discovery on DNA databases
Background: DNA signatures are distinct short nucleotide sequences that provide valuable information that is used for various purposes, such as the design of Polymerase Chain Reac...
Hsiao Ping Lee, Tzu-Fang Sheu, Chuan Yi Tang
BMCBI
2008
214views more  BMCBI 2008»
13 years 7 months ago
Accelerating String Set Matching in FPGA Hardware for Bioinformatics Research
Background: This paper describes techniques for accelerating the performance of the string set matching problem with particular emphasis on applications in computational proteomic...
Yoginder S. Dandass, Shane C. Burgess, Mark Lawren...
PVLDB
2008
201views more  PVLDB 2008»
13 years 6 months ago
Ed-Join: an efficient algorithm for similarity joins with edit distance constraints
There has been considerable interest in similarity join in the research community recently. Similarity join is a fundamental operation in many application areas, such as data inte...
Chuan Xiao, Wei Wang 0011, Xuemin Lin
PDPTA
2007
13 years 8 months ago
Software Support for Non-Numerical Computing on Multi-Core Chips
- Multi-core chips present a new computing environment that can benefit from software support for non-numerical applications. Heterogeneous cores will allow efficient sophisticated...
Jerry Potter, Howard Jay Siegel
VLDB
2005
ACM
120views Database» more  VLDB 2005»
14 years 27 days ago
Efficiently Processing Queries on Interval-and-Value Tuples in Relational Databases
With the increasing occurrence of temporal and spatial data in present-day database applications, the interval data type is adopted by more and more database systems. For an effic...
Jost Enderle, Nicole Schneider, Thomas Seidl