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    BMCBI
    2007
    123views more  BMCBI 2007»
    Tracembler - software for in-silico chromosome walking in unassembled genomes
    13 years 8 months ago
    Tracembler - software for in-silico chromosome walking in unassembled genomes
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    Background: Whole genome shotgun sequencing produces increasingly higher coverage of a genome with random sequence reads. Progressive whole genome assembly and eventual finishing ...
    Qunfeng Dong, Matthew D. Wilkerson, Volker Brendel
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    BMCBI
    2010
    193views more  BMCBI 2010»
    MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
    13 years 8 months ago
    MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
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    Background: Mass spectrometry (MS) coupled with online separation methods is commonly applied for differential and quantitative profiling of biological samples in metabolomic as w...
    Tomás Pluskal, Sandra Castillo, Alejandro V...
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    BMCBI
    2008
    127views more  BMCBI 2008»
    MetaMine - A tool to detect and analyse gene patterns in their environmental context
    13 years 8 months ago
    MetaMine - A tool to detect and analyse gene patterns in their environmental context
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    Background: Modern sequencing technologies allow rapid sequencing and bioinformatic analysis of genomes and metagenomes. With every new sequencing project a vast number of new pro...
    Uta Bohnebeck, Thierry Lombardot, Renzo Kottmann, ...
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    BMCBI
    2008
    184views more  BMCBI 2008»
    Integrating protein-protein interactions and text mining for protein function prediction
    13 years 8 months ago
    Integrating protein-protein interactions and text mining for protein function prediction
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    Background: Functional annotation of proteins remains a challenging task. Currently the scientific literature serves as the main source for yet uncurated functional annotations, b...
    Samira Jaeger, Sylvain Gaudan, Ulf Leser, Dietrich...
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    BMCBI
    2006
    133views more  BMCBI 2006»
    An integrated approach to the prediction of domain-domain interactions
    13 years 8 months ago
    An integrated approach to the prediction of domain-domain interactions
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    Background: The development of high-throughput technologies has produced several large scale protein interaction data sets for multiple species, and significant efforts have been ...
    Hyunju Lee, Minghua Deng, Fengzhu Sun, Ting Chen
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