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BMCBI
2005
100views more  BMCBI 2005»
13 years 7 months ago
EvDTree: structure-dependent substitution profiles based on decision tree classification of 3D environments
Background: Structure-dependent substitution matrices increase the accuracy of sequence alignments when the 3D structure of one sequence is known, and are successful e.g. in fold ...
Jean-Christophe Gelly, Laurent Chiche, Jér&...
IPPS
2010
IEEE
13 years 4 months ago
Scalable parallel I/O alternatives for massively parallel partitioned solver systems
Abstract--With the development of high-performance computing, I/O issues have become the bottleneck for many massively parallel applications. This paper investigates scalable paral...
Jing Fu, Ning Liu, Onkar Sahni, Kenneth E. Jansen,...
TOG
2010
117views more  TOG 2010»
13 years 2 months ago
Multi-feature matching of fresco fragments
We present a multiple-feature approach for determining matches between small fragments of archaeological artifacts such as Bronze-Age and Roman frescoes. In contrast with traditio...
Corey Toler-Franklin, Benedict J. Brown, Tim Weyri...
RECOMB
2011
Springer
12 years 10 months ago
Rich Parameterization Improves RNA Structure Prediction
Motivation. Current approaches to RNA structure prediction range from physics-based methods, which rely on thousands of experimentally-measured thermodynamic parameters, to machin...
Shay Zakov, Yoav Goldberg, Michael Elhadad, Michal...
POPL
2012
ACM
12 years 3 months ago
Sound predictive race detection in polynomial time
Data races are among the most reliable indicators of programming errors in concurrent software. For at least two decades, Lamport’s happens-before (HB) relation has served as th...
Yannis Smaragdakis, Jacob Evans, Caitlin Sadowski,...