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    BMCBI
    2008
    104views more  BMCBI 2008»
    ReRep: Computational detection of repetitive sequences in genome survey sequences (GSS)
    13 years 8 months ago
    ReRep: Computational detection of repetitive sequences in genome survey sequences (GSS)
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    Background: Genome survey sequences (GSS) offer a preliminary global view of a genome since, unlike ESTs, they cover coding as well as non-coding DNA and include repetitive region...
    Thomas D. Otto, Leonardo H. F. Gomes, Marcelo Alve...
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    BMCBI
    2007
    134views more  BMCBI 2007»
    Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign
    13 years 8 months ago
    Efficient pairwise RNA structure prediction using probabilistic alignment constraints in Dynalign
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    Background: Joint alignment and secondary structure prediction of two RNA sequences can significantly improve the accuracy of the structural predictions. Methods addressing this p...
    Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathe...
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    BMCBI
    2008
    114views more  BMCBI 2008»
    Dinucleotide controlled null models for comparative RNA gene prediction
    13 years 8 months ago
    Dinucleotide controlled null models for comparative RNA gene prediction
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    Background: Comparative prediction of RNA structures can be used to identify functional noncoding RNAs in genomic screens. It was shown recently by Babak et al. [BMC Bioinformatic...
    Tanja Gesell, Stefan Washietl
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    BMCBI
    2007
    113views more  BMCBI 2007»
    In silico panning for a non-competitive peptide inhibitor
    13 years 8 months ago
    In silico panning for a non-competitive peptide inhibitor
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    Background: Peptide ligands have tremendous therapeutic potential as efficacious drugs. Currently, more than 40 peptides are available in the market for a drug. However, since cos...
    Yukiko Yagi, Kotaro Terada, Takahisa Noma, Kazunor...
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    BMCBI
    2008
    139views more  BMCBI 2008»
    Hierarchical structure of cascade of primary and secondary periodicities in Fourier power spectrum of alphoid higher order repea
    13 years 8 months ago
    Hierarchical structure of cascade of primary and secondary periodicities in Fourier power spectrum of alphoid higher order repea
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    Background: Identification of approximate tandem repeats is an important task of broad significance and still remains a challenging problem of computational genomics. Often there ...
    Vladimir Paar, Nenad Pavin, Ivan Basar, Marija Ros...
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