Sciweavers

86 search results - page 14 / 18
» Non-contiguous Sequence Pattern Queries
Sort
View
CIDR
2007
177views Algorithms» more  CIDR 2007»
13 years 9 months ago
bdbms - A Database Management System for Biological Data
Biologists are increasingly using databases for storing and managing their data. Biological databases typically consist of a mixture of raw data, metadata, sequences, annotations,...
Mohamed Y. Eltabakh, Mourad Ouzzani, Walid G. Aref
FCCM
2011
IEEE
311views VLSI» more  FCCM 2011»
12 years 11 months ago
String Matching in Hardware Using the FM-Index
—String matching is a ubiquitous problem that arises in a wide range of applications in computing, e.g., packet routing, intrusion detection, web querying, and genome analysis. D...
Edward Fernandez, Walid Najjar, Stefano Lonardi
ICDE
2007
IEEE
123views Database» more  ICDE 2007»
14 years 9 months ago
Stream Monitoring under the Time Warping Distance
The goal of this paper is to monitor numerical streams, and to find subsequences that are similar to a given query sequence, under the DTW (Dynamic Time Warping) distance. Applica...
Yasushi Sakurai, Christos Faloutsos, Masashi Yamam...
BMCBI
2004
101views more  BMCBI 2004»
13 years 7 months ago
A database for G proteins and their interaction with GPCRs
Background: G protein-coupled receptors (GPCRs) transduce signals from extracellular space into the cell, through their interaction with G proteins, which act as switches forming ...
Antigoni L. Elefsinioti, Pantelis G. Bagos, Ioanni...
CPM
1998
Springer
209views Combinatorics» more  CPM 1998»
13 years 11 months ago
A Fast Bit-Vector Algorithm for Approximate String Matching Based on Dynamic Programming
The approximate string matching problem is to find all locations at which a query of length m matches a substring of a text of length n with k-or-fewer differences. Simple and prac...
Gene Myers