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BMCBI
2005
122views more  BMCBI 2005»
15 years 2 months ago
ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequenc
Background: Currently available methods to predict splice sites are mainly based on the independent and progressive alignment of transcript data (mostly ESTs) to the genomic seque...
Paola Bonizzoni, Raffaella Rizzi, Graziano Pesole
COGSR
2011
75views more  COGSR 2011»
14 years 9 months ago
A memory for goals model of sequence errors
We propose a model of routine sequence actions based on the Memory for Goals model. The model presents a novel process description for both perseveration and anticipation errors, ...
J. Gregory Trafton, Erik M. Altmann, Raj M. Ratwan...
BMCBI
2007
190views more  BMCBI 2007»
15 years 2 months ago
Discriminative motif discovery in DNA and protein sequences using the DEME algorithm
Background: Motif discovery aims to detect short, highly conserved patterns in a collection of unaligned DNA or protein sequences. Discriminative motif finding algorithms aim to i...
Emma Redhead, Timothy L. Bailey
BMCBI
2010
116views more  BMCBI 2010»
15 years 2 months ago
SEQADAPT: an adaptable system for the tracking, storage and analysis of high throughput sequencing experiments
Background: High throughput sequencing has become an increasingly important tool for biological research. However, the existing software systems for managing and processing these ...
David B. Burdick, Christopher C. Cavnor, Jeremy Ha...
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ICC
2007
IEEE
117views Communications» more  ICC 2007»
15 years 8 months ago
Applying Techniques from Frame Synchronization for Biological Sequence Analysis
— During the last years, the amount of genetic data available has increased rapidly which creates the demand for advanced techniques for their interpretation. In the following, w...
Johanna Weindl, Joachim Hagenauer