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BMCBI
2011
13 years 2 months ago
Motif-guided sparse decomposition of gene expression data for regulatory module identification
Background: Genes work coordinately as gene modules or gene networks. Various computational approaches have been proposed to find gene modules based on gene expression data; for e...
Ting Gong, Jianhua Xuan, Li Chen, Rebecca B. Riggi...
BMCBI
2005
152views more  BMCBI 2005»
13 years 7 months ago
CoPub Mapper: mining MEDLINE based on search term co-publication
Background: High throughput microarray analyses result in many differentially expressed genes that are potentially responsible for the biological process of interest. In order to ...
Blaise T. F. Alako, Antoine Veldhoven, Sjozef van ...
CLA
2007
13 years 9 months ago
Representing Numeric Values in Concept Lattices
Formal Concept Analysis is based on the occurrence of symbolic attributes in individual objects, or observations. But, when the attribute is numeric, treatment has been awkward. In...
John L. Pfaltz
CC
2006
Springer
125views System Software» more  CC 2006»
13 years 11 months ago
Path-Based Reuse Distance Analysis
Abstract. Profiling can effectively analyze program behavior and provide critical information for feedback-directed or dynamic optimizations. Based on memory profiling, reuse dista...
Changpeng Fang, Steve Carr, Soner Önder, Zhen...
BMCBI
2008
202views more  BMCBI 2008»
13 years 7 months ago
Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data
Background: Integrating data from multiple global assays and curated databases is essential to understand the spatiotemporal interactions within cells. Different experiments measu...
Yuji Zhang, Jianhua Xuan, Benildo de los Reyes, Ro...