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    » On Complexity of Easy Predictable Sequences
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    BMCBI
    2005
    201views more  BMCBI 2005»
    Principal component analysis for predicting transcription-factor binding motifs from array-derived data
    13 years 7 months ago
    Principal component analysis for predicting transcription-factor binding motifs from array-derived data
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    Background: The responses to interleukin 1 (IL-1) in human chondrocytes constitute a complex regulatory mechanism, where multiple transcription factors interact combinatorially to...
    Yunlong Liu, Matthew P. Vincenti, Hiroki Yokota
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    BMCBI
    2008
    121views more  BMCBI 2008»
    ReAlignerV: Web-based genomic alignment tool with high specificity and robustness estimated by species-specific insertion sequen
    13 years 7 months ago
    ReAlignerV: Web-based genomic alignment tool with high specificity and robustness estimated by species-specific insertion sequen
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    Background: Detecting conserved noncoding sequences (CNSs) across species highlights the functional elements. Alignment procedures combined with computational prediction of transc...
    Hisakazu Iwama, Yukio Hori, Kensuke Matsumoto, Koj...
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    BMCBI
    2006
    99views more  BMCBI 2006»
    Genetic algorithm learning as a robust approach to RNA editing site prediction
    13 years 7 months ago
    Genetic algorithm learning as a robust approach to RNA editing site prediction
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    Background: RNA editing is one of several post-transcriptional modifications that may contribute to organismal complexity in the face of limited gene complement in a genome. One f...
    James Thompson, Shuba Gopal
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    BMCBI
    2004
    133views more  BMCBI 2004»
    Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction
    13 years 7 months ago
    Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction
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    Background: RNA secondary structure prediction methods based on probabilistic modeling can be developed using stochastic context-free grammars (SCFGs). Such methods can readily co...
    Robin D. Dowell, Sean R. Eddy
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    BMCBI
    2007
    130views more  BMCBI 2007»
    Exploiting residue-level and profile-level interface propensities for usage in binding sites prediction of proteins
    13 years 7 months ago
    Exploiting residue-level and profile-level interface propensities for usage in binding sites prediction of proteins
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    Background: Recognition of binding sites in proteins is a direct computational approach to the characterization of proteins in terms of biological and biochemical function. Residu...
    Qiwen Dong, Xiaolong Wang, Lei Lin, Yi Guan
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