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    » On Complexity of Easy Predictable Sequences
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    BMCBI
    2008
    140views more  BMCBI 2008»
    Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
    13 years 7 months ago
    Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
    Download  www.biomedcentral.com
    Background: Structural alignment of RNAs is becoming important, since the discovery of functional non-coding RNAs (ncRNAs). Recent studies, mainly based on various approximations ...
    Kazutaka Katoh, Hiroyuki Toh
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    BMCBI
    2007
    126views more  BMCBI 2007»
    High-throughput identification of interacting protein-protein binding sites
    13 years 7 months ago
    High-throughput identification of interacting protein-protein binding sites
    Download  www.biomedcentral.com
    Background: With the advent of increasing sequence and structural data, a number of methods have been proposed to locate putative protein binding sites from protein surfaces. Ther...
    Jo-Lan Chung, Wei Wang, Philip E. Bourne
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    BMCBI
    2008
    211views more  BMCBI 2008»
    CPSP-tools - Exact and complete algorithms for high-throughput 3D lattice protein studies
    13 years 7 months ago
    CPSP-tools - Exact and complete algorithms for high-throughput 3D lattice protein studies
    Download  www.bioinf.uni-freiburg.de
    Background: The principles of protein folding and evolution pose problems of very high inherent complexity. Often these problems are tackled using simplified protein models, e.g. ...
    Martin Mann, Sebastian Will, Rolf Backofen
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    BMCBI
    2005
    94views more  BMCBI 2005»
    Measuring similarities between transcription factor binding sites
    13 years 7 months ago
    Measuring similarities between transcription factor binding sites
    Download  www.ulb.ac.be
    Background: Collections of transcription factor binding profiles (Transfac, Jaspar) are essential to identify regulatory elements in DNA sequences. Subsets of highly similar profi...
    Szymon M. Kielbasa, Didier Gonze, Hanspeter Herzel
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    ICPPW
    2009
    IEEE
    191views Distributed And Parallel Com...» more  ICPPW 2009»
    A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data
    13 years 5 months ago
    A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data
    Download  www.eecs.wsu.edu
    Identifying peptides, which are short polymeric chains of amino acid residues in a protein sequence, is of fundamental importance in systems biology research. The most popular appr...
    Gaurav Ramesh Kulkarni, Ananth Kalyanaraman, Willi...
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